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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs11723261 1 rs61795006 chr4:253601 ZNF718 chr4:53272-156488:+ 0.51 9.89 4.07E-21 Immune response to smallpox vaccine (IL-6)
THCA cis rs11723261 1 rs61795007 chr4:255264 ZNF718 chr4:53272-156488:+ 0.51 9.89 4.07E-21 Immune response to smallpox vaccine (IL-6)
THCA cis rs9426935 1 rs61803655 chr1:153769332 CREB3L4 chr1:153940379-153946832:+ -0.28 -6.22 1.11E-9 Lentiform nucleus volume
THCA cis rs1335645 1 rs61805898 chr1:111684719 DRAM2 chr1:111659955-111682838:- -0.28 -4.27 2.31E-5 Liver enzyme levels (gamma-glutamyl transferase)
THCA cis rs12143789 1 rs61806199 chr1:119450102 WARS2 chr1:119573841-119683295:- 0.27 3.43 0.000652 Waist-to-hip ratio adjusted for body mass index
THCA cis rs12143789 1 rs61806202 chr1:119465457 WARS2 chr1:119573841-119683295:- 0.26 3.48 0.000543 Waist-to-hip ratio adjusted for body mass index
THCA cis rs12143789 1 rs61806205 chr1:119482315 WARS2 chr1:119573841-119683295:- 0.25 3.42 0.000673 Waist-to-hip ratio adjusted for body mass index
THCA cis rs12143789 1 rs61806231 chr1:119496482 WARS2 chr1:119573841-119683295:- 0.26 3.51 0.000486 Waist-to-hip ratio adjusted for body mass index
THCA cis rs17030613 1 rs61818802 chr1:113181739 MOV10 chr1:113217048-113243367:+ 0.18 4.11 4.66E-5 Diastolic blood pressure;Blood pressure
THCA cis rs17030613 1 rs61818802 chr1:113181739 ST7L chr1:113066142-113162405:- 0.68 10.74 3.12E-24 Diastolic blood pressure;Blood pressure
THCA cis rs4357530 1 rs61819219 chr1:151084375 BNIPL chr1:151009029-151020076:+ -0.18 -3.63 0.000314 Body mass index
THCA cis rs12134133 1 rs61822669 chr1:207421214 CD55 chr1:207494817-207534309:+ 0.19 7.57 1.91E-13 Posterior cortical atrophy and Alzheimer's disease
THCA cis rs12134133 1 rs61822674 chr1:207436723 CD55 chr1:207494817-207534309:+ 0.19 7.52 2.67E-13 Posterior cortical atrophy and Alzheimer's disease
THCA cis rs12134133 1 rs61822697 chr1:207485164 CD55 chr1:207494817-207534309:+ 0.2 7.6 1.59E-13 Posterior cortical atrophy and Alzheimer's disease
THCA cis rs12134133 1 rs61822697 chr1:207485164 CR1 chr1:207669473-207815109:+ -0.14 -3.44 0.000631 Posterior cortical atrophy and Alzheimer's disease